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Orchestrator for the full academic research pipeline: research -> write -> integrity check -> review -> revise -> re-review -> re-revise -> final integrity check -> finalize. Coordinates deep-research, academic-paper, and academic-paper-reviewer into a seamless 10-stage workflow with mandatory, coverage-bounded integrity checks, two-stage peer review, and auditable quality-assurance artifacts. Triggers on: academic pipeline, research to paper, full paper workflow, paper pipeline, end-to-end paper, research-to-publication, complete paper workflow, 연구부터 논문까지, 연구 주제 설정부터 논문 완성까지, 논문 전체 워크플로, flujo de trabajo académico, investigación a artículo, flujo completo de artículo, pipeline de investigación completa, publicación de investigación, flujo de trabajo completo del artículo.

Use this Skill: https://skilld.dev/gh/imbad0202/academic-research-skills/academic-pipeline

This session only. Nothing lands on disk.

templatespipeline_status_template.md

≈954 tokens on demand. Your agent reads this file only when SKILL.md points to it.

Pipeline Status Dashboard Template

This template defines the output format for the Progress Dashboard. Switch between language versions based on user language.


English Version

+=========================================+
|   Academic Pipeline Status              |
+=========================================+
| Topic: {topic}                          |
+-----------------------------------------+

  Stage 1 RESEARCH    [{status_icon}] {status_text}
    {mode_line}
    {outputs_line}

  Stage 2 WRITE       [{status_icon}] {status_text}
    {mode_line}
    {outputs_line}

  Stage 3 REVIEW      [{status_icon}] {status_text}
    {mode_line}
    {decision_line}

  Stage 4 REVISE      [{status_icon}] {status_text}
    {revision_round_line}
    {addressed_line}

  Stage 3' RE-REVIEW  [{status_icon}] {status_text}
    {loop_count_line}

  Stage 5 FINALIZE    [{status_icon}] {status_text}
    {format_line}

+-----------------------------------------+
| Materials:                              |
|   [{icon}] RQ Brief                     |
|   [{icon}] Methodology Blueprint        |
|   [{icon}] Bibliography                 |
|   [{icon}] Synthesis Report             |
|   [{icon}] Paper Draft                  |
|   [{icon}] Review Reports               |
|   [{icon}] Revision Roadmap             |
|   [{icon}] Revised Draft                |
|   [{icon}] Response to Reviewers        |
|   [{icon}] Final Paper                  |
+-----------------------------------------+
| Revision History:                       |
|   {revision_history}                    |
+-----------------------------------------+
| Next Step: {next_step_suggestion}       |
+=========================================+

Field Definitions

status_icon

Status Icon
completed v
in_progress ..
pending (space)
skipped --

status_text

Status Text
completed Completed
in_progress In Progress
pending Pending
skipped Skipped

mode_line

Format: Mode: {mode_name}

  • Only displayed when status is completed or in_progress
  • If mode switched (e.g., plan -> full), display the full path

outputs_line

Format: Outputs: {output_1}, {output_2}, ...

  • Only displayed when status is completed
  • List all deliverables for that stage

decision_line

Format: Decision: {Accept/Minor Revision/Major Revision/Reject}

  • Only displayed when Stage 3 or Stage 3' is completed

revision_round_line

Format: Revision Round: {current}/{max}

  • Only displayed when Stage 4 is in_progress

addressed_line

Format: Addressed: {count}/{total} required revisions

  • Only displayed when Stage 4 is in_progress

loop_count_line

Format: Loop: {count}/2

  • Only displayed for Stage 3'

material icon

Status Icon
available v
missing (space)

revision_history

One line per round:

Round {n}: {decision} | {addressed}/{total} items addressed
  Pending: {pending_items_summary}

If no revision history, display "(No revision history yet)".

next_step_suggestion

Auto-generated suggestion based on current state:

  • Stage 1 completed: "Recommend proceeding to Stage 2 (WRITE) using {recommended_mode} mode"
  • Stage 3 completed (Major): "Need to enter Stage 4 (REVISE), {N} required items"
  • Stage 4 completed: "Recommend proceeding to Stage 3' (RE-REVIEW) to confirm revision quality"
  • Stage 3' completed (Accept): "Congratulations! Proceed to Stage 5 (FINALIZE) to produce final version"
  • Pipeline completed: "Pipeline complete! Final paper is ready."

Simplified Version (Auto-appended after stage completion)

One-line progress bar:

Pipeline: [v]RESEARCH -> [v]WRITE -> [..]REVIEW -> [ ]REVISE -> [ ]FINALIZE

Source: SKILL.md on GitHub

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  • Gen Agent Trust Hub6d

    The skill is a complex academic research orchestrator that manages a multi-stage workflow from research to final manuscript. It includes robust security patterns, such as explicit 'instruction-data' boundaries, to protect against malicious content in research materials. The skill relies on local script execution and standard academic tools like Pandoc and Tectonic for its functionality.

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    1 finding · Score: 86/100

Signed by skilld at 6ecfa4f. This ties the file your Agent reads to that commit on GitHub. It does not review the instructions.

Last checked against GitHub 33 minutes ago.

Activeupdated 2 hours ago
Other metadata
metadata
{
  "version": "3.22.2",
  "last_updated": "2026-09-25",
  "depends_on": "deep-research, academic-paper, academic-paper-reviewer",
  "status": "active",
  "data_access_level": "raw",
  "task_type": "open-ended",
  "related_skills": [
    "deep-research",
    "academic-paper",
    "academic-paper-reviewer"
  ]
}

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