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Universal deep research agent team. 13-agent pipeline for rigorous academic research on any topic. 8 modes: full research, quick brief, paper review, lit-review, fact-check, three-way literature scan, Socratic guided research dialogue, and systematic review with optional meta-analysis. Covers research question formulation, Socratic mentoring, methodology design, systematic literature search, source verification, cross-source synthesis, risk of bias assessment, meta-analysis, APA 7.0 report compilation, editorial review, devil's advocate challenges, ethics review, and post-research literature monitoring. Triggers on: research, deep research, literature review, systematic review, meta-analysis, PRISMA, evidence synthesis, fact-check, WHY HOW WHAT papers, 3W literature scan, guide my research, help me think through, 研究, 深度研究, 文獻回顧, 文獻探討, 系統性回顧, 後設分析, 事實查核, 三段式文獻掃描, 引導我的研究, 幫我釐清, 幫我想想, 我不確定要研究什麼, 研究方向, 研究主題, 심층 연구, 문헌 조사, 체계적 문헌고찰, 메타분석, 사실 확인, 연구 방향을 잡아줘, 연구 주제 정하는 것을 도와줘, revisión de literatura, metaanálisis

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referencessource_quality_hierarchy.md

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Source Quality Hierarchy — Evidence Grading Framework

Purpose

Systematic framework for grading evidence quality, used by the source_verification_agent and bibliography_agent.

Evidence Pyramid (7 Levels)

         ╱╲
        ╱ I ╲        Systematic Reviews / Meta-Analyses
       ╱──────╲
      ╱  II    ╲     Randomized Controlled Trials
     ╱──────────╲
    ╱   III      ╲   Controlled Studies (non-randomized)
   ╱──────────────╲
  ╱    IV          ╲  Case-Control / Cohort Studies
 ╱──────────────────╲
╱     V              ╲  Systematic Reviews of Descriptive Studies
╱──────────────────────╲
╱      VI                ╲  Single Descriptive / Qualitative Studies
╱──────────────────────────╲
╱       VII                  ╲  Expert Opinion / Committee Reports
╱──────────────────────────────╲

Detailed Level Descriptions

Level I: Systematic Reviews & Meta-Analyses

Weight: Highest Description: Rigorous synthesis of all available evidence using predefined, systematic methods. Characteristics:

  • Pre-registered protocol (PROSPERO or similar)
  • Comprehensive search across multiple databases
  • Explicit inclusion/exclusion criteria
  • Quality assessment of included studies
  • Statistical pooling (meta-analysis) when appropriate
  • PRISMA reporting guidelines followed

Trusted Sources: Cochrane Library, Campbell Collaboration, JBI Evidence Synthesis

Caveats: Quality depends on included studies ("garbage in, garbage out"); may be outdated if field moves fast.

Level II: Randomized Controlled Trials (RCTs)

Weight: Very High Description: Experimental studies with random allocation to intervention/control groups. Characteristics:

  • Random assignment
  • Control/comparison group
  • Blinding (single, double, or triple)
  • Pre-registered protocol
  • Adequate sample size
  • Intention-to-treat analysis

Caveats: Not always feasible (especially in social science/education); ethical constraints; external validity concerns.

Level III: Controlled Studies Without Randomization

Weight: High Description: Quasi-experimental designs with comparison groups but no randomization. Characteristics:

  • Comparison group present
  • Pre-post measurements
  • Attempts to control confounds
  • Larger samples than case studies

Examples: Difference-in-differences, propensity score matching, regression discontinuity.

Caveats: Selection bias risk; confounding variables harder to control.

Level IV: Case-Control & Cohort Studies

Weight: Moderate-High Description: Observational studies tracking groups over time or comparing cases to controls. Characteristics:

  • Longitudinal (cohort) or retrospective (case-control)
  • Natural variation, no researcher intervention
  • Large samples possible
  • Real-world context

Caveats: Cannot establish causation; confounders possible; recall bias (case-control).

Level V: Systematic Reviews of Descriptive/Qualitative Studies

Weight: Moderate Description: Rigorous synthesis of qualitative or descriptive research. Characteristics:

  • Systematic search and selection
  • Quality appraisal of included studies
  • Meta-synthesis or meta-ethnography techniques
  • Transparent methods

Caveats: Quality limited by included studies; interpretive layer adds subjectivity.

Level VI: Single Descriptive or Qualitative Studies

Weight: Low-Moderate Description: Individual case studies, ethnographies, surveys, descriptive analyses. Characteristics:

  • In-depth, context-rich
  • Exploratory or descriptive purpose
  • Small samples typical
  • Thick description

Caveats: Limited generalizability; researcher subjectivity; no causal claims warranted.

Level VII: Expert Opinion & Committee Reports

Weight: Lowest Description: Position papers, editorials, committee reports, guidelines based on expert consensus. Characteristics:

  • Based on expertise and experience
  • Often integrates multiple evidence types informally
  • May reflect institutional or ideological positions

Caveats: Not empirically tested; potential bias; "authority" ≠ "evidence."

Grading Rubric

Each source is assessed on two distinct axes that the columns below combine. Conflating them caps strong interpretive and qualitative work at a low overall grade no matter how excellent it is within its own tradition.

  • Study-design level — where the design sits on the experimental-to-descriptive ladder (the 7-level pyramid above). This is absolute and field-neutral: a single qualitative case study is Level VI whether it appears in medicine or history.
  • Fitness for claim within a discipline — whether the source is excellent by its field's norms for the specific claim being made. A primary archival source can be Level VI design evidence and at the same time the gold-standard evidence its field offers for an interpretive claim.

The Evidence Level criterion below grades fitness, not raw design level. A source earns Grade A on Evidence Level when its study-design level meets or exceeds its own field's gold standard (see the Field-Specific Adjustments table below), not only when it reaches Level I-II. So humanities work at Level VI, where Level VI is the field's gold standard, can score Grade A on this criterion. The other five criteria are field-neutral.

Criterion Grade A (Excellent) Grade B (Good) Grade C (Adequate) Grade D (Weak) Grade F (Unacceptable)
Evidence Level Meets/exceeds the field's gold standard for the claim One level below the field's gold standard Two levels below Well below field norm Unclassifiable or fundamentally unfit for the claim
Peer Review Rigorous peer review Standard peer review Editorial review No formal review Self-published
Methodology Exemplary, replicable Sound, described Adequate Questionable Absent/flawed
Sample/Data Large, representative Adequate Limited but justified Small, convenience Unspecified
Currency < 3 years 3-5 years 5-10 years > 10 years Outdated for topic
Conflicts None declared or detected Minor, disclosed Moderate, disclosed Undisclosed potential Clear undisclosed conflict

"Currency" is claim-relative: a foundational or historical source is not penalized for age when the claim is about that source itself or its period. Apply the age bands only when recency bears on the claim (e.g., empirical state-of-the-field assertions).

Overall Source Grade

The overall grade reflects fitness for the claim, not raw study-design level. A source whose design level is low (e.g., a Level VI primary source) can still earn an overall Grade A when it is excellent by its field's norms for the claim it supports.

Aggregation rule. Grade the six criteria above (each A-F), then combine:

  1. Integrity floor. If Conflicts is F (clear undisclosed conflict), or Peer Review is F in a field whose Field-Specific Adjustments row (below) treats formal review as the norm, the overall grade is capped at D regardless of the other criteria. Integrity failures are not outweighed by strength elsewhere.
  2. Base grade. Otherwise the overall grade is the median of the six criterion grades (on the A=4 … F=0 scale, rounding down on a tie between two adjacent grades).
  3. Fitness adjustment. Raise the base grade by one step when Evidence Level (fitness) is Grade A — a source that is gold-standard for its field reaches overall A even when field-neutral criteria like Currency or Sample/Data sit lower. Do not apply this step if Methodology is F (a fundamentally flawed method is not rescued by field fit). Never raise past A.

So an interpretive study that is gold-standard within its discipline reaches overall Grade A, while an integrity-compromised (step 1) or methodologically broken (step 3 proviso) source does not, in any field.

Overall grade meaning:

  • A: Use as primary evidence
  • B: Use as supporting evidence
  • C: Use with explicit caveats
  • D: Use only if no better source; acknowledge weakness
  • F: Do not use; cite only if critiquing

Field-Specific Adjustments

Not all fields use the same evidence hierarchy. Adjust expectations:

Field Gold Standard Common Level Notes
Medicine/Health Level I-II (RCTs, meta-analyses) Level I-III Evidence-based medicine tradition
Education Level III-IV (quasi-experimental) Level IV-VI Randomization often impractical
Social Science Level III-V Level IV-VI Mixed methods common
Policy Level IV-V + VII (expert panels) Level V-VII Context-dependent; expert opinion valued
Humanities Level VI (primary sources) Level VI-VII Different epistemology; "evidence" means different things
Technology Level III + industry reports Level V-VII Fast-moving; peer review lags reality

Predatory Publication Indicators

Red Flags Checklist

  • Aggressive email solicitation to submit
  • Acceptance within 72 hours of submission
  • No identifiable editorial board (or fake names)
  • Not indexed in Scopus, Web of Science, or PubMed
  • Not member of COPE (Committee on Publication Ethics)
  • Not listed in DOAJ (Directory of Open Access Journals)
  • Excessively broad scope ("International Journal of Everything")
  • Fake or inflated impact metrics
  • Poor grammar/spelling on journal website
  • APC (article processing charge) suspiciously low (< $200 for full OA)
  • Editorial office in different country from stated location
  • No retraction policy or ethics guidelines

Verification Resources

  • Beall's List (unofficial, but useful starting point)
  • Cabell's Predatory Reports (subscription-based)
  • DOAJ (whitelist of legitimate OA journals)
  • COPE member directory
  • Scopus Source List
  • Journal Citation Reports (Clarivate)
  • Think. Check. Submit. (thinkchecksubmit.org)

Source: SKILL.md on GitHub

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Other metadata
metadata
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  "version": "2.12.1",
  "last_updated": "2026-08-15",
  "status": "active",
  "data_access_level": "raw",
  "task_type": "open-ended",
  "related_skills": [
    "academic-paper",
    "academic-pipeline"
  ]
}

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